Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3395Membrane protein. (148 aa)    
Predicted Functional Partners:
RN09_3396
Hydrolase.
       0.766
RN09_4265
Hypothetical protein.
      
 0.672
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.645
RN09_3390
Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
       0.645
RN09_3391
Hypothetical protein.
       0.645
Ltp1
Lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.
       0.595
RN09_3393
Hypothetical protein.
       0.540
RN09_3394
Hypothetical protein.
       0.540
RN09_1360
Glycosyl hydrolase.
      
 0.509
RN09_2328
Hypothetical protein.
      
 0.509
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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