Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3397mRNA interferase MazF9; Toxic component of a type II toxin-antitoxin (TA) system. (117 aa)    
Predicted Functional Partners:
RN09_3398
Antitoxin MazE9.
 
 
 
 0.996
RN09_2541
Antitoxin MazE7.
   
   0.785
RN09_1846
mRNA interferase MazF4.
  
   
 0.714
RN09_3399
Arginine/alanine-rich protein.
       0.686
RN09_2453
Antitoxin MazE6.
  
 
 0.667
RN09_1366
mRNA interferase MazF3.
  
   
 0.640
HspX
Alpha-crystallin; Belongs to the small heat shock protein (HSP20) family.
     
 0.523
RN09_1367
Antitoxin MazE3.
   
 
 0.488
vapC-31
Ribonuclease VapC21; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
     
 0.487
RN09_2406
Toxin MazF5.
  
   
 0.485
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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