Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3403Hypothetical protein. (383 aa)    
Predicted Functional Partners:
RN09_4450
Insertion sequence element IS1533 transposase.
 
    0.762
RN09_2488
Transcriptional regulator.
  
     0.454
RN09_3398
Antitoxin MazE9.
 
     0.454
RN09_3401
Hypothetical protein.
      
0.445
RN09_3402
Membrane protein.
       0.445
RN09_3400
Hypothetical protein.
       0.443
RN09_4197
Transposase.
 
   
 0.414
RN09_3404
Hypothetical protein.
       0.413
RN09_2589
Ribonuclease VapC37.
  
     0.410
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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