Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RN09_2488 | RN09_2589 | Transcriptional regulator. | Ribonuclease VapC37. | 0.486 |
RN09_2488 | RN09_3403 | Transcriptional regulator. | Hypothetical protein. | 0.454 |
RN09_2589 | RN09_2488 | Ribonuclease VapC37. | Transcriptional regulator. | 0.486 |
RN09_2589 | RN09_3403 | Ribonuclease VapC37. | Hypothetical protein. | 0.410 |
RN09_3398 | RN09_3400 | Antitoxin MazE9. | Hypothetical protein. | 0.544 |
RN09_3398 | RN09_3401 | Antitoxin MazE9. | Hypothetical protein. | 0.476 |
RN09_3398 | RN09_3402 | Antitoxin MazE9. | Membrane protein. | 0.476 |
RN09_3398 | RN09_3403 | Antitoxin MazE9. | Hypothetical protein. | 0.455 |
RN09_3400 | RN09_3398 | Hypothetical protein. | Antitoxin MazE9. | 0.544 |
RN09_3400 | RN09_3401 | Hypothetical protein. | Hypothetical protein. | 0.774 |
RN09_3400 | RN09_3402 | Hypothetical protein. | Membrane protein. | 0.774 |
RN09_3400 | RN09_3403 | Hypothetical protein. | Hypothetical protein. | 0.443 |
RN09_3401 | RN09_3398 | Hypothetical protein. | Antitoxin MazE9. | 0.476 |
RN09_3401 | RN09_3400 | Hypothetical protein. | Hypothetical protein. | 0.774 |
RN09_3401 | RN09_3402 | Hypothetical protein. | Membrane protein. | 0.880 |
RN09_3401 | RN09_3403 | Hypothetical protein. | Hypothetical protein. | 0.446 |
RN09_3401 | RN09_4450 | Hypothetical protein. | Insertion sequence element IS1533 transposase. | 0.485 |
RN09_3402 | RN09_3398 | Membrane protein. | Antitoxin MazE9. | 0.476 |
RN09_3402 | RN09_3400 | Membrane protein. | Hypothetical protein. | 0.774 |
RN09_3402 | RN09_3401 | Membrane protein. | Hypothetical protein. | 0.880 |
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