Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3500Hypothetical protein. (154 aa)    
Predicted Functional Partners:
tsf
Elongation factor EF-Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
 
     0.731
rpsB
30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
     
 0.706
RN09_4219
Alanine/valine-rich protein.
  
    0.685
RN09_4397
DNA integrity scanning protein DisA; Belongs to the DisA family.
     
 0.681
RN09_4625
Hypothetical protein.
      
 0.672
RN09_4220
ESX-4 secretion system protein EccC4; Overlaps another CDS with the same product name.
  
  
 0.583
RN09_4221
ESX-4 secretion system protein EccC4; Overlaps another CDS with the same product name.
  
  
 0.583
RN09_3028
Aminopeptidase PepN; Overlaps another CDS with the same product name.
 
   
 0.568
RN09_3002
Overlaps another CDS with the same product name.
 
  
 0.562
MycP4
Membrane-anchored mycosin; Belongs to the peptidase S8 family.
   
  
 0.553
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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