Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RN09_3530Hypothetical protein. (370 aa)    
Predicted Functional Partners:
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
       0.804
RN09_3525
TetR family HTH-type transcriptional regulator.
     
 0.702
RN09_1264
Hypothetical protein.
  
     0.633
RN09_2530
Hypothetical protein.
  
     0.608
RN09_3819
Response regulator.
  
     0.570
RN09_3830
NADH-quinone oxidoreductase subunit G.
  
     0.542
RN09_3532
Alanine/arginine-rich protein.
       0.446
RN09_3972
Hypothetical protein.
  
     0.432
RN09_2723
Epimerase family protein; Overlaps another CDS with the same product name.
  
    0.424
RN09_2724
Epimerase family protein; Overlaps another CDS with the same product name.
  
    0.424
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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