Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RN09_3564Daunorubicin ABC transporter permease DrrB. (203 aa)    
Predicted Functional Partners:
DrrC
Daunorubicin ABC transporter permease DrrC.
 
 
 0.992
DrrA
Daunorubicin ABC transporter ATP-binding protein DrrA.
 
  
 0.965
DrrB
Daunorubicin ABC transporter permease DrrB.
      0.954
PapA5
Phthiocerol/phthiodiolone dimycocerosyl transferase.
 
  
 0.952
RN09_3562
Daunorubicin ABC transporter ATP-binding protein DrrA.
  
  
 0.934
RN09_3560
Phthiocerol synthesis polyketide synthase type I PpsD; Overlaps another CDS with the same product name.
 
  
 0.815
PpsE
Phthiocerol synthesis polyketide synthase type I PpsE.
  
  
 0.805
PpsD
Phthiocerol synthesis polyketide synthase type I PpsD; Overlaps another CDS with the same product name.
  
  
 0.795
RN09_0223
Transmembrane protein.
 
    0.653
RN09_2150
Hypothetical protein.
  
   
 0.615
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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