RN09_3576 protein (Mycobacterium tuberculosis variant africanum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Knowledge-based Evidence

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textmining

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co-expression

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[Homology]

Score

RN09_3576

Insertion sequence element IS1533 transposase. (127 aa)

Predicted Functional Partners:

RN09_3574

0.896

DnaB

0.857

RN09_4191

0.833

RN09_4450

0.809

RN09_4449

0.675

RN09_3575

0.567

DnaA

0.449

RN09_0089

0.438

RN09_1996

0.427

PolA

0.427

Your Current Organism:

Mycobacterium tuberculosis variant africanum

NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DnaA	DnaB	RN09_0001	RN09_0071	Chromosomal replication initiator protein DnaA.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.	0.933
DnaA	PolA	RN09_0001	RN09_1997	Chromosomal replication initiator protein DnaA.	DNA polymerase I; Overlaps another CDS with the same product name.	0.571
DnaA	RN09_1996	RN09_0001	RN09_1996	Chromosomal replication initiator protein DnaA.	DNA polymerase I; Overlaps another CDS with the same product name.	0.529
DnaA	RN09_3576	RN09_0001	RN09_3576	Chromosomal replication initiator protein DnaA.	Insertion sequence element IS1533 transposase.	0.449
DnaB	DnaA	RN09_0071	RN09_0001	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.	Chromosomal replication initiator protein DnaA.	0.933
DnaB	PolA	RN09_0071	RN09_1997	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.	DNA polymerase I; Overlaps another CDS with the same product name.	0.806
DnaB	RN09_1996	RN09_0071	RN09_1996	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.	DNA polymerase I; Overlaps another CDS with the same product name.	0.845
DnaB	RN09_3576	RN09_0071	RN09_3576	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.	Insertion sequence element IS1533 transposase.	0.857
PolA	DnaA	RN09_1997	RN09_0001	DNA polymerase I; Overlaps another CDS with the same product name.	Chromosomal replication initiator protein DnaA.	0.571
PolA	DnaB	RN09_1997	RN09_0071	DNA polymerase I; Overlaps another CDS with the same product name.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.	0.806
PolA	RN09_1996	RN09_1997	RN09_1996	DNA polymerase I; Overlaps another CDS with the same product name.	DNA polymerase I; Overlaps another CDS with the same product name.	0.997
PolA	RN09_3576	RN09_1997	RN09_3576	DNA polymerase I; Overlaps another CDS with the same product name.	Insertion sequence element IS1533 transposase.	0.427
RN09_0089	RN09_3576	RN09_0089	RN09_3576	Maturase.	Insertion sequence element IS1533 transposase.	0.438
RN09_0089	RN09_4191	RN09_0089	RN09_4191	Maturase.	Transposase.	0.648
RN09_1996	DnaA	RN09_1996	RN09_0001	DNA polymerase I; Overlaps another CDS with the same product name.	Chromosomal replication initiator protein DnaA.	0.529
RN09_1996	DnaB	RN09_1996	RN09_0071	DNA polymerase I; Overlaps another CDS with the same product name.	Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.	0.845
RN09_1996	PolA	RN09_1996	RN09_1997	DNA polymerase I; Overlaps another CDS with the same product name.	DNA polymerase I; Overlaps another CDS with the same product name.	0.997
RN09_1996	RN09_3576	RN09_1996	RN09_3576	DNA polymerase I; Overlaps another CDS with the same product name.	Insertion sequence element IS1533 transposase.	0.427
RN09_3574	RN09_3576	RN09_3574	RN09_3576	Insertion sequence element IS1533 transposase.	Insertion sequence element IS1533 transposase.	0.896
RN09_3574	RN09_4191	RN09_3574	RN09_4191	Insertion sequence element IS1533 transposase.	Transposase.	0.761