Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LppXLipoprotein LppX. (233 aa)    
Predicted Functional Partners:
MmpL7
Transmembrane transport protein MmpL7; Overlaps another CDS with the same product name.
  
   
 0.898
RN09_3573
Transmembrane transport protein MmpL7; Overlaps another CDS with the same product name.
  
   
 0.845
RN09_3581
Polyketide synthase; Overlaps another CDS with the same product name.
  
  
 0.818
PPE42
PPE family protein PPE42; Belongs to the mycobacterial PPE family.
  
     0.753
RN09_3578
Hypothetical protein.
       0.722
RN09_2870
Transmembrane transport protein MmpL9; Overlaps another CDS with the same product name.
  
   
 0.717
PapA5
Phthiocerol/phthiodiolone dimycocerosyl transferase.
  
  
 0.710
RN09_0546
Hypothetical protein; Belongs to the mycobacterial PPE family.
  
     0.708
DrrC
Daunorubicin ABC transporter permease DrrC.
   
  
 0.700
PPE21
PPE family protein PPE21; Belongs to the mycobacterial PPE family.
  
     0.695
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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