Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FadD22p-hydroxybenzoyl--AMP ligase. (705 aa)    
Predicted Functional Partners:
RN09_3584
Chorismate pyruvate-lyase.
 
     0.881
FadD29
long-chain-fatty-acid--AMP ligase FadD29.
 
0.876
MenE
2-succinylbenzoic acid--CoA ligase; Overlaps another CDS with the same product name.
 
 0.820
FadD18
fatty-acid--CoA ligase FadD18.
 
 0.817
RN09_4309
long-chain-fatty-acid--CoA ligase FadD19; Overlaps another CDS with the same product name.
 
 0.813
RN09_3580
Polyketide synthase; Overlaps another CDS with the same product name.
  
 
 0.810
RN09_3581
Polyketide synthase; Overlaps another CDS with the same product name.
  
 
 0.790
RN09_3582
Polyketide synthase; Overlaps another CDS with the same product name.
  
 
 0.767
FadD19
long-chain-fatty-acid--CoA ligase FadD19; Overlaps another CDS with the same product name.
 
 0.674
RN09_3100
Fatty acid synthase; Overlaps another CDS with the same product name.
  
 
 0.614
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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