Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RN09_3595PGL/p-HBAD biosynthesis glycosyltransferase. (275 aa)    
Predicted Functional Partners:
RN09_3594
Hypothetical protein.
 
  
 0.957
fcl
Nucleotide-sugar epimerase EpiA; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 
  
 0.773
RN09_1876
Sugar transferase.
 
     0.744
RN09_1873
Hypothetical protein.
 
  
 0.734
RN09_1880
Sugar transferase.
 
     0.730
RN09_3593
Hypothetical protein.
 
    0.469
RN09_1866
Hypothetical protein.
 
  
 0.428
gmd
GDP-D-mannose dehydratase GmdA; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 0.420
RN09_2678
Integral membrane protein.
      
 0.405
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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