Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RN09_3598Rhamnosyl O-methyltransferase. (245 aa)    
Predicted Functional Partners:
RN09_3597
PGL/p-HBAD biosynthesis glycosyltransferase.
 
  
 0.693
RN09_3584
Chorismate pyruvate-lyase.
  
   
 0.652
RN09_2555
Hypothetical protein.
  
     0.616
RN09_2563
Hypothetical protein.
  
     0.600
RN09_3600
PGL/p-HBAD biosynthesis rhamnosyltransferase.
  
  
 0.566
PE_PGRS30
PE-PGRS family protein PE_PGRS30.
  
     0.544
PPE6
PPE family protein PPE5.
  
     0.529
RN09_0133
Hypothetical protein.
  
     0.528
RN09_4087
PPE family protein PPE55; Overlaps another CDS with the same product name; Belongs to the mycobacterial PPE family.
  
     0.523
RN09_4091
PPE family protein PPE56.
  
     0.521
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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