Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FadD13Long chain-fatty-acid--CoA ligase FadD13. (503 aa)    
Predicted Functional Partners:
RN09_3753
Diacylglycerol O-acyltransferase; Overlaps another CDS with the same product name; Belongs to the long-chain O-acyltransferase family.
  
  
 0.986
LipR
Acetyl-hydrolase LipR.
  
 
 0.977
RN09_3747
FAD-containing monooxygenase MymA.
  
  
 0.954
RN09_3751
Diacylglycerol O-acyltransferase.
  
  
 0.954
RN09_3752
Diacylglycerol O-acyltransferase; Overlaps another CDS with the same product name.
  
  
 0.954
AdhD
Alcohol dehydrogenase D.
  
  
 0.943
Pks
Polyketide synthase.
 
 0.926
RN09_3553
Phthiocerol synthesis polyketide synthase type I PpsB; Overlaps another CDS with the same product name; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.922
RN09_2524
Polyketide synthase; Overlaps another CDS with the same product name; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.921
RN09_2045
Polyketide synthase; Overlaps another CDS with the same product name.
 
 0.920
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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