Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CobC | HisD | RN09_2746 | RN09_1960 | Aminotransferase; Overlaps another CDS with the same product name. | Histidinol dehydrogenase; Overlaps another CDS with the same product name; Belongs to the histidinol dehydrogenase family. | 0.686 |
CobC | RN09_3813 | RN09_2746 | RN09_3813 | Aminotransferase; Overlaps another CDS with the same product name. | Histidinol-phosphatase. | 0.910 |
CobC | hisC | RN09_2746 | RN09_1961 | Aminotransferase; Overlaps another CDS with the same product name. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.933 |
CobC | hisF | RN09_2746 | RN09_1967 | Aminotransferase; Overlaps another CDS with the same product name. | Imidazole glycerol phosphate synthase subunit HisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. | 0.727 |
CobC | hisG | RN09_2746 | RN09_2607 | Aminotransferase; Overlaps another CDS with the same product name. | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. | 0.724 |
CobC | pat | RN09_2746 | RN09_4608 | Aminotransferase; Overlaps another CDS with the same product name. | Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. | 0.904 |
CobC | priA-2 | RN09_2746 | RN09_1965 | Aminotransferase; Overlaps another CDS with the same product name. | Phosphoribosyl isomerase A; Involved in both the histidine and tryptophan biosynthetic pathways; Belongs to the HisA/HisF family. | 0.719 |
FadE24 | PflA | RN09_3815 | RN09_3814 | acyl-CoA dehydrogenase FadE24. | Pyruvate formate lyase activating protein PflA. | 0.791 |
FadE24 | RN09_3812 | RN09_3815 | RN09_3812 | acyl-CoA dehydrogenase FadE24. | Hypothetical protein. | 0.508 |
FadE24 | RN09_3813 | RN09_3815 | RN09_3813 | acyl-CoA dehydrogenase FadE24. | Histidinol-phosphatase. | 0.613 |
HisD | CobC | RN09_1960 | RN09_2746 | Histidinol dehydrogenase; Overlaps another CDS with the same product name; Belongs to the histidinol dehydrogenase family. | Aminotransferase; Overlaps another CDS with the same product name. | 0.686 |
HisD | RN09_3813 | RN09_1960 | RN09_3813 | Histidinol dehydrogenase; Overlaps another CDS with the same product name; Belongs to the histidinol dehydrogenase family. | Histidinol-phosphatase. | 0.932 |
HisD | hisC | RN09_1960 | RN09_1961 | Histidinol dehydrogenase; Overlaps another CDS with the same product name; Belongs to the histidinol dehydrogenase family. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.998 |
HisD | hisF | RN09_1960 | RN09_1967 | Histidinol dehydrogenase; Overlaps another CDS with the same product name; Belongs to the histidinol dehydrogenase family. | Imidazole glycerol phosphate synthase subunit HisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. | 0.998 |
HisD | hisG | RN09_1960 | RN09_2607 | Histidinol dehydrogenase; Overlaps another CDS with the same product name; Belongs to the histidinol dehydrogenase family. | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. | 0.971 |
HisD | pat | RN09_1960 | RN09_4608 | Histidinol dehydrogenase; Overlaps another CDS with the same product name; Belongs to the histidinol dehydrogenase family. | Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. | 0.917 |
HisD | priA-2 | RN09_1960 | RN09_1965 | Histidinol dehydrogenase; Overlaps another CDS with the same product name; Belongs to the histidinol dehydrogenase family. | Phosphoribosyl isomerase A; Involved in both the histidine and tryptophan biosynthetic pathways; Belongs to the HisA/HisF family. | 0.992 |
PflA | FadE24 | RN09_3814 | RN09_3815 | Pyruvate formate lyase activating protein PflA. | acyl-CoA dehydrogenase FadE24. | 0.791 |
PflA | RN09_3812 | RN09_3814 | RN09_3812 | Pyruvate formate lyase activating protein PflA. | Hypothetical protein. | 0.743 |
PflA | RN09_3813 | RN09_3814 | RN09_3813 | Pyruvate formate lyase activating protein PflA. | Histidinol-phosphatase. | 0.881 |
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