Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_3909Hypothetical protein. (96 aa)    
Predicted Functional Partners:
EntC
Isochorismate synthase.
       0.725
Gpm2
Phosphoglycerate mutase.
       0.723
RN09_3906
SOJ/ParA-like protein.
       0.552
RN09_4783
Peptidoglycan biosynthesis protein.
   
    0.409
RN09_4785
Peptidoglycan biosynthesis protein; Overlaps another CDS with the same product name.
   
    0.409
RN09_2563
Hypothetical protein.
   
    0.406
RN09_2564
Hypothetical protein.
   
    0.406
RN09_4769
Hypothetical protein.
   
    0.406
RN09_4775
Alanine/proline-rich protein; Overlaps another CDS with the same product name.
   
    0.406
RN09_4205
Bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase.
     
 0.402
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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