Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4002Hypothetical protein. (269 aa)    
Predicted Functional Partners:
RN09_0753
Hypothetical protein.
      
 0.672
RN09_3812
Hypothetical protein.
      
 0.672
RN09_4003
TetR family transcriptional regulator.
       0.607
RN09_3406
Transposase.
   
    0.552
Nei
Endonuclease VIII.
       0.494
RN09_1129
GCN5-like N-acetyltransferase.
  
     0.472
RN09_4004
ATP-dependent helicase; Overlaps another CDS with the same product name.
       0.468
Lhr
ATP-dependent helicase; Overlaps another CDS with the same product name.
       0.468
LprP
Lipoprotein LprP.
   
    0.422
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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