Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4091PPE family protein PPE56. (1475 aa)    
Predicted Functional Partners:
IniB
Isoniazid inducible protein IniB.
  
     0.774
PE_PGRS30
PE-PGRS family protein PE_PGRS30.
  
     0.774
RN09_2563
Hypothetical protein.
  
     0.774
RN09_4721
ESX-1 secretion-associated protein EspE.
  
   
 0.774
RN09_2555
Hypothetical protein.
  
     0.773
RN09_3419
CRISPR type III-associated RAMP protein Csm5.
  
     0.773
RN09_4774
Alanine/proline-rich protein; Overlaps another CDS with the same product name.
 
 
   0.773
RN09_4163
Hypothetical protein.
  
     0.772
RN09_2811
Hypothetical protein.
  
     0.770
RN09_4290
PE-PGRS family protein PE_PGRS57.
  
     0.769
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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