STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4100Hypothetical protein. (264 aa)    
Predicted Functional Partners:
RN09_4101
Oxidoreductase.
     0.888
RN09_1886
Glycosyltransferase.
  
  
 0.641
RN09_1152
Hypothetical protein.
  
     0.580
RN09_0259
Hypothetical protein.
  
     0.577
RN09_3311
Transmembrane alanine/glycine-rich protein.
  
    0.574
PlsB1
Acyltransferase PlsB; Belongs to the GPAT/DAPAT family.
  
 
 0.561
RN09_3043
Glycerol-3-phosphate acyltransferase; Overlaps another CDS with the same product name.
  
 
 0.560
RN09_4744
ESX-1 secretion system protein EccE1.
  
     0.532
FixA
Electron transfer flavoprotein subunit beta.
  
 
 0.519
FixB
Electron transfer flavoprotein subunit alpha.
  
 
 0.518
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.