STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4109Oxidoreductase; Overlaps another CDS with the same product name. (58 aa)    
Predicted Functional Partners:
RN09_4110
Oxidoreductase; Overlaps another CDS with the same product name.
     0.978
RN09_0384
Hypothetical protein.
 
  
 0.749
RN09_3851
Hypothetical protein.
  
     0.742
RN09_4368
acyl-CoA dehydrogenase FadE32.
 
 
 0.740
RN09_0385
Hypothetical protein.
  
     0.727
RN09_0949
4-carboxymuconolactone decarboxylase.
 
   
 0.714
RN09_4354
CoA-transferase subunit beta.
 
     0.701
RN09_3850
Aminoglycoside phosphotransferase.
  
    0.692
RN09_0940
Hypothetical protein.
 
     0.691
RN09_4107
Antitoxin RelJ; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.669
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.