Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4115Hypothetical protein. (130 aa)    
Predicted Functional Partners:
RN09_4113
ATP/GTP-binding protein.
 
 
 0.999
RN09_4114
Hypothetical protein.
 
  
 0.981
RN09_4116
Hypothetical protein.
 
   
 0.969
RN09_4112
Hypothetical protein.
       0.872
SpoU
tRNA/rRNA methylase SpoU; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.484
RN09_0720
Integral membrane protein.
  
     0.472
CelA1
Cellulase CelA; Belongs to the glycosyl hydrolase family 6.
  
   
 0.443
RN09_1073
Hypothetical protein.
  
     0.412
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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