RN09_4151 protein (Mycobacterium tuberculosis variant africanum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RN09_4151

Hypothetical protein. (191 aa)

Predicted Functional Partners:

RN09_4150

0.996

DnaE2

0.879

RN09_4122

0.877

RN09_4152

0.872

RN09_4123

0.862

DinX

0.736

DinP

0.736

RN09_2582

0.539

GuaA

0.533

RecN

0.505

Your Current Organism:

Mycobacterium tuberculosis variant africanum

NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DinP	DinX	RN09_3716	RN09_1905	DNA polymerase IV 2.	DNA polymerase IV; Belongs to the DNA polymerase type-Y family.	0.491
DinP	DnaE2	RN09_3716	RN09_4124	DNA polymerase IV 2.	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	0.620
DinP	RN09_4122	RN09_3716	RN09_4122	DNA polymerase IV 2.	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	0.620
DinP	RN09_4123	RN09_3716	RN09_4123	DNA polymerase IV 2.	Error-prone DNA polymerase; Overlaps another CDS with the same product name; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	0.620
DinP	RN09_4151	RN09_3716	RN09_4151	DNA polymerase IV 2.	Hypothetical protein.	0.736
DinP	RecN	RN09_3716	RN09_2084	DNA polymerase IV 2.	DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.	0.709
DinX	DinP	RN09_1905	RN09_3716	DNA polymerase IV; Belongs to the DNA polymerase type-Y family.	DNA polymerase IV 2.	0.491
DinX	DnaE2	RN09_1905	RN09_4124	DNA polymerase IV; Belongs to the DNA polymerase type-Y family.	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	0.648
DinX	RN09_4122	RN09_1905	RN09_4122	DNA polymerase IV; Belongs to the DNA polymerase type-Y family.	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	0.648
DinX	RN09_4123	RN09_1905	RN09_4123	DNA polymerase IV; Belongs to the DNA polymerase type-Y family.	Error-prone DNA polymerase; Overlaps another CDS with the same product name; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	0.648
DinX	RN09_4151	RN09_1905	RN09_4151	DNA polymerase IV; Belongs to the DNA polymerase type-Y family.	Hypothetical protein.	0.736
DinX	RecN	RN09_1905	RN09_2084	DNA polymerase IV; Belongs to the DNA polymerase type-Y family.	DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.	0.778
DnaE2	DinP	RN09_4124	RN09_3716	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	DNA polymerase IV 2.	0.620
DnaE2	DinX	RN09_4124	RN09_1905	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	DNA polymerase IV; Belongs to the DNA polymerase type-Y family.	0.648
DnaE2	GuaA	RN09_4124	RN09_4153	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	GMP synthase.	0.469
DnaE2	RN09_4122	RN09_4124	RN09_4122	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	0.994
DnaE2	RN09_4123	RN09_4124	RN09_4123	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	Error-prone DNA polymerase; Overlaps another CDS with the same product name; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.	0.994
DnaE2	RN09_4150	RN09_4124	RN09_4150	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	Hypothetical protein.	0.887
DnaE2	RN09_4151	RN09_4124	RN09_4151	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	Hypothetical protein.	0.879
GuaA	DnaE2	RN09_4153	RN09_4124	GMP synthase.	Error-prone DNA polymerase; Overlaps another CDS with the same product name.	0.469