Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RN09_4162Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family. (350 aa)    
Predicted Functional Partners:
Pks9
Polyketide synthase; Overlaps another CDS with the same product name.
  
  
 0.797
MbtI
Salicylate synthase.
   
  
 0.789
RN09_1662
Lysine N-acetyltransferase MbtK.
  
  
 0.782
RN09_1664
Iron ABC transporter ATP-binding protein/permease IrtB.
  
  
 0.778
MbtB
Phenyloxazoline synthase.
  
   0.757
RN09_1860
TDP-4-oxo-6-deoxy-D-glucose transaminase.
  
     0.754
MbtJ
Acetyl hydrolase.
   
    0.730
RN09_1663
Iron ABC transporter ATP-binding protein/permease IrtA.
  
  
 0.719
RN09_4165
Hypothetical protein.
 
  
 0.659
RN09_1861
Hypothetical protein.
 
   
 0.630
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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