Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RmlCdTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (202 aa)    
Predicted Functional Partners:
RmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 0.999
RmlB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 0.999
RmlA
Glucose-1-phosphate thymidylyltransferase.
  
 0.998
WbbL1
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase.
 
  
 0.951
RN09_4623
dTDP-glucose 4,6-dehydratase.
 
 0.948
RN09_1860
TDP-4-oxo-6-deoxy-D-glucose transaminase.
  
 
 0.939
ManB
D-alpha-D-mannose-1-phosphate guanylyltransferase ManB; Overlaps another CDS with the same product name.
 
  
 0.913
Glf
UDP-galactopyranose mutase.
  
  
 0.881
GalE3
UDP-glucose 4-epimerase GalE.
  
 
 0.850
RN09_1869
Hypothetical protein.
  
  
 0.819
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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