Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4252Transmembrane protein. (1052 aa)    
Predicted Functional Partners:
RN09_2412
Hypothetical protein.
  
     0.660
RN09_0774
Antitoxin VapB5; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.547
RN09_4251
PE family protein PPE60.
       0.528
RN09_0578
Hypothetical protein.
 
     0.488
RN09_0827
Ribonuclease VapC8.
  
     0.452
RN09_2011
Hypothetical protein.
   
  
 0.444
RN09_2187
Hypothetical protein.
  
     0.401
RN09_4163
Hypothetical protein.
  
     0.400
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.