Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FadE27acyl-CoA dehydrogenase FadE27. (262 aa)    
Predicted Functional Partners:
FadE26
acyl-CoA dehydrogenase FadE26.
 
 0.999
FadD19
long-chain-fatty-acid--CoA ligase FadD19; Overlaps another CDS with the same product name.
 
 
 0.934
Far
fatty-acid-CoA racemase; Belongs to the CoA-transferase III family.
  
 
 0.929
Mcr
alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family.
  
 
 0.929
FixB
Electron transfer flavoprotein subunit alpha.
 
 
 0.817
EchA19
enoyl-CoA hydratase EchA19.
 
 0.811
FixA
Electron transfer flavoprotein subunit beta.
 
 
 0.810
FadB
Fatty oxidation protein FadB.
  
 0.797
FadE31
acyl-CoA dehydrogenase FadE31; Overlaps another CDS with the same product name.
  
   
 0.795
FadE29
acyl-CoA dehydrogenase FadE29.
 
   
 0.788
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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