Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4329Hypothetical protein. (262 aa)    
Predicted Functional Partners:
RN09_4330
Oxidoreductase.
   0.986
RN09_4331
Hypothetical protein.
 
    0.932
RN09_1890
Polyketide synthase; Overlaps another CDS with the same product name.
 
 
 0.837
RN09_0384
Hypothetical protein.
 
 
 0.793
RN09_4324
3-ketosteroid-9-alpha-hydroxylase oxygenase subunit.
 
     0.792
RN09_4377
Flavin-dependent monooxygenase oxygenase subunit HsaA; Overlaps another CDS with the same product name.
 
   0.790
BphC
Extradiol dioxygenase.
 
   0.697
RN09_4266
Mce associated protein; Overlaps another CDS with the same product name.
 
 0.689
RN09_4339
3-oxosteroid 1-dehydrogenase.
 
    0.681
RN09_2238
Flavoprotein.
  
    0.678
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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