Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FadE29acyl-CoA dehydrogenase FadE29. (387 aa)    
Predicted Functional Partners:
FadE28
acyl-CoA dehydrogenase FadE28.
 
 0.999
RN09_4343
Hypothetical protein.
 
 0.998
RN09_4344
Hypothetical protein.
 
 
 0.998
FadA5
acetyl-CoA acetyltransferase FadA; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.996
Ltp2
Lipid transfer protein.
 
 0.984
Ltp1
Lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.960
FadA6
acetyl-CoA acetyltransferase FadA.
  
 0.959
Ltp4
Lipid transfer protein.
 
 0.956
Cyp125
Steroid C26-monooxygenase; Belongs to the cytochrome P450 family.
 
 
 0.947
Ltp3
Lipid carrier protein.
 
 0.939
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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