Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RN09_4355Oxidoreductase. (355 aa)    
Predicted Functional Partners:
EchA20
enoyl-CoA hydratase EchA20.
 
 
 0.996
RN09_4362
Oxidoreductase.
 
 
  0.983
RN09_4353
CoA-transferase subunit alpha.
 
    0.970
RN09_4354
CoA-transferase subunit beta.
 
    0.969
RN09_4351
Short-chain type dehydrogenase/reductase.
 
  
 0.941
FadA6
acetyl-CoA acetyltransferase FadA.
 
 
 0.933
Ltp1
Lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.909
FadA5
acetyl-CoA acetyltransferase FadA; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.909
RN09_4350
Short-chain type dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.843
RN09_4368
acyl-CoA dehydrogenase FadE32.
 
  
 0.785
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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