Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FadD3fatty-acid--CoA ligase FadD3. (507 aa)    
Predicted Functional Partners:
RN09_4362
Oxidoreductase.
 
  0.991
FadE30
acyl-CoA dehydrogenase FadE30.
 
  
 0.941
BphD
4,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10), 2-diene-4-oate hydrolase.
 
 0.924
RN09_2524
Polyketide synthase; Overlaps another CDS with the same product name; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.916
Pks
Polyketide synthase.
 
 0.916
RN09_2042
Polyketide synthase; Overlaps another CDS with the same product name.
  
 0.914
EchA20
enoyl-CoA hydratase EchA20.
 
 
 0.910
RN09_2045
Polyketide synthase; Overlaps another CDS with the same product name.
 
 0.909
RN09_3553
Phthiocerol synthesis polyketide synthase type I PpsB; Overlaps another CDS with the same product name; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.909
RN09_2041
Polyketide synthase; Overlaps another CDS with the same product name.
  
 0.898
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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