STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4366acyl-CoA dehydrogenase FadE31; Overlaps another CDS with the same product name. (82 aa)    
Predicted Functional Partners:
FadE32
acyl-CoA dehydrogenase FadE32.
 
  
 0.974
RN09_4368
acyl-CoA dehydrogenase FadE32.
 
  
 0.974
FadE31
acyl-CoA dehydrogenase FadE31; Overlaps another CDS with the same product name.
     0.965
FadE33
acyl-CoA dehydrogenase FadE33.
 
  
 0.963
RN09_4362
Oxidoreductase.
 
  0.917
RN09_4354
CoA-transferase subunit beta.
 
 
 0.910
Ltp2
Lipid transfer protein.
 
 0.889
RN09_4353
CoA-transferase subunit alpha.
 
  
 0.880
RN09_4343
Hypothetical protein.
 
 0.874
Ltp4
Lipid transfer protein.
 
 0.869
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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