Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MutYAdenine glycosylase; Overlaps another CDS with the same product name. (260 aa)    
Predicted Functional Partners:
RN09_4402
Adenine glycosylase; Overlaps another CDS with the same product name.
      0.907
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
 
   
 0.823
XthA
Exodeoxyribonuclease III protein XthA.
    
 0.782
Fpg
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
  
  
 0.743
MutT2
8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family.
     
 0.739
PolA
DNA polymerase I; Overlaps another CDS with the same product name.
   
  
 0.739
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
     
 0.705
AlkA
Bifunctional regulatory protein/DNA repair enzyme AlkA.
  
  
 0.702
MutT1
8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family.
  
  
 0.702
Ogt
methylated-DNA--protein-cysteine methyltransferase; Overlaps another CDS with the same product name.
     
 0.694
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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