Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4441Integral membrane protein. (365 aa)    
Predicted Functional Partners:
RN09_4442
Integral membrane protein.
     
 0.888
RN09_4445
Membrane protein.
     
 0.793
RN09_4446
Hypothetical protein.
     
 0.753
RN09_4443
Transferase; Overlaps another CDS with the same product name.
     
 0.700
RN09_4444
Transferase; Overlaps another CDS with the same product name.
     
 0.700
RN09_0223
Transmembrane protein.
  
     0.585
RN09_1682
Sigma factor regulatory protein; Overlaps another CDS with the same product name.
  
     0.483
DesA1
acyl-ACP desaturase DesA.
 
     0.422
RN09_0114
Membrane protein.
  
     0.402
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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