Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DnaE1 | DnaN | RN09_1917 | RN09_0002 | DNA polymerase III subunit alpha. | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | 0.983 |
DnaE1 | DnaQ | RN09_1917 | RN09_4535 | DNA polymerase III subunit alpha. | DNA polymerase III subunit epsilon. | 0.947 |
DnaE1 | RN09_0003 | RN09_1917 | RN09_0003 | DNA polymerase III subunit alpha. | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | 0.801 |
DnaE1 | RN09_2693 | RN09_1917 | RN09_2693 | DNA polymerase III subunit alpha. | Hypothetical protein. | 0.973 |
DnaE1 | RN09_2964 | RN09_1917 | RN09_2964 | DNA polymerase III subunit alpha. | Hypothetical protein. | 0.985 |
DnaE1 | RN09_3042 | RN09_1917 | RN09_3042 | DNA polymerase III subunit alpha. | Hypothetical protein. | 0.629 |
DnaE1 | RN09_4458 | RN09_1917 | RN09_4458 | DNA polymerase III subunit alpha. | DNA polymerase. | 0.965 |
DnaE1 | Ssb | RN09_1917 | RN09_0067 | DNA polymerase III subunit alpha. | Single-strand DNA-binding protein. | 0.655 |
DnaE1 | dnaX | RN09_1917 | RN09_4546 | DNA polymerase III subunit alpha. | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.966 |
DnaN | DnaE1 | RN09_0002 | RN09_1917 | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | DNA polymerase III subunit alpha. | 0.983 |
DnaN | DnaQ | RN09_0002 | RN09_4535 | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | DNA polymerase III subunit epsilon. | 0.981 |
DnaN | RN09_0003 | RN09_0002 | RN09_0003 | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | 0.971 |
DnaN | RN09_2693 | RN09_0002 | RN09_2693 | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.965 |
DnaN | RN09_2964 | RN09_0002 | RN09_2964 | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.985 |
DnaN | RN09_3042 | RN09_0002 | RN09_3042 | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.444 |
DnaN | RN09_4458 | RN09_0002 | RN09_4458 | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | DNA polymerase. | 0.981 |
DnaN | Ssb | RN09_0002 | RN09_0067 | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | Single-strand DNA-binding protein. | 0.570 |
DnaN | dnaX | RN09_0002 | RN09_4546 | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.985 |
DnaQ | DnaE1 | RN09_4535 | RN09_1917 | DNA polymerase III subunit epsilon. | DNA polymerase III subunit alpha. | 0.947 |
DnaQ | DnaN | RN09_4535 | RN09_0002 | DNA polymerase III subunit epsilon. | DNA polymerase III subunit beta; Overlaps another CDS with the same product name. | 0.981 |
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