Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4499Hypothetical protein. (319 aa)    
Predicted Functional Partners:
RN09_4500
Lyase.
     
 0.868
PonA2
Bifunctional penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase.
       0.865
RN09_2775
Hypothetical protein.
  
     0.666
RN09_3266
Hypothetical protein.
  
     0.643
RN09_3679
tRNA-specific 2-thiouridylase; Overlaps another CDS with the same product name.
 
     0.604
whiA
Transcriptional regulator WhiA; Involved in cell division and chromosome segregation.
  
     0.580
RN09_2640
Transmembrane protein.
 
     0.561
RN09_2964
Hypothetical protein.
 
     0.553
pheT
phenylalanine--tRNA ligase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
    0.551
RN09_1234
Dolichyl-phosphate-mannose--protein mannosyltransferase.
  
     0.542
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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