STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4538Hypothetical protein. (284 aa)    
Predicted Functional Partners:
IscS
Cysteine desulfurase.
      
 0.649
RN09_4536
Ligase.
      
 0.646
RN09_4397
DNA integrity scanning protein DisA; Belongs to the DisA family.
  
    0.619
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.599
RN09_4540
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.591
RadA
DNA repair protein RadA; Overlaps another CDS with the same product name.
   
    0.584
RN09_4396
DNA repair protein RadA; Overlaps another CDS with the same product name.
   
    0.584
CobQ2
Cobyric acid synthase CobQ.
      
 0.544
GltB
Glutamate synthase large subunit.
  
    0.518
RN09_4613
Hypothetical protein.
 
    0.469
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.