STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cut5Putative cutinase. (233 aa)    
Predicted Functional Partners:
PtbB
Phosphotyrosine protein phosphatase.
  
 
 0.767
NuoM
NADH-quinone oxidoreductase subunit M.
    
 
 0.735
RN09_4550
Oxidoreductase.
     
 0.688
Icl
Isocitrate lyase.
      
 0.684
PE_PGRS30
PE-PGRS family protein PE_PGRS30.
 
 
 0.664
RN09_0536
Hypothetical protein.
    
  0.637
RN09_0499
Membrane bound polyketide synthase; Overlaps another CDS with the same product name.
 
    0.627
RN09_1561
ABC transporter ATP-binding protein.
  
 0.620
Tbd2
ABC transporter ATP-binding protein.
  
 0.620
RN09_2149
ABC transporter ATP-binding protein/permease.
  
 0.617
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.