Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4571Oxidoreductase; Overlaps another CDS with the same product name. (131 aa)    
Predicted Functional Partners:
RN09_4570
Oxidoreductase; Overlaps another CDS with the same product name.
    0.993
RN09_4569
Diacylglycerol O-acyltransferase; Belongs to the long-chain O-acyltransferase family.
  
   0.970
CtpJ
Cation transporter ATPase J.
  
  
 0.546
EthR
HTH-type transcriptional repressor EthR.
 
   
 0.540
RN09_1713
Monooxygenase.
  
     0.532
RN09_3709
Monooxygenase; Overlaps another CDS with the same product name.
  
     0.509
RN09_3749
Oxidoreductase SadH; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.498
RN09_1093
Monooxygenase.
  
     0.475
RN09_1533
Short-chain type dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.450
PPE67
PPE family protein PPE67; Belongs to the mycobacterial PPE family.
       0.402
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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