Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FadE36acyl-CoA dehydrogenase FadE36. (351 aa)    
Predicted Functional Partners:
FadE2
acyl-CoA dehydrogenase FadE2.
 
 0.980
FadE1
acyl-CoA dehydrogenase FadE1.
 
 0.975
RN09_3358
Short-chain type dehydrogenase/reductase.
 
 
 0.679
RN09_3850
Aminoglycoside phosphotransferase.
  
     0.677
RN09_0165
3-hydroxyl-thioester dehydratase.
 
 
 0.598
RN09_3851
Hypothetical protein.
  
  
 0.556
RN09_4593
Hydrolase.
       0.548
FadB4
NADPH quinone oxidoreductase FadB.
 
   0.489
RN09_0186
Quinone oxidoreductase.
 
   0.487
TesB2
acyl-CoA thioesterase TesB.
 
  
 0.472
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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