Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4597Two component sensor kinase TcrY; Overlaps another CDS with the same product name. (125 aa)    
Predicted Functional Partners:
RN09_4598
Two component sensor kinase TcrY; Overlaps another CDS with the same product name.
     0.993
RN09_4599
Two component transcriptional regulator TcrX.
 
 
 0.979
TrcR
Two component transcriptional regulator TrcR.
 
 
 0.894
RegX3
Two component sensory transduction protein RegX.
 
 
 0.890
PrrA
Two component transcriptional regulator PrrA.
 
 
 0.890
MtrA
Two component DNA-binding response regulator MtrA.
 
 
 0.890
TcrA
Two component DNA binding transcriptional regulator TcrA.
 
 
 0.887
PhoP
Two component system response transcriptional positive regulator PhoP.
 
 
 0.887
MprA
Two-component response regulator MrpA.
 
 
 0.885
KdpE
Transcriptional regulator KdpE.
 
 
 0.869
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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