STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LipELipase LipE; Overlaps another CDS with the same product name. (329 aa)    
Predicted Functional Partners:
RN09_4611
Lipase LipE; Overlaps another CDS with the same product name.
     0.989
EchA21
enoyl-CoA hydratase EchA21.
       0.786
RN09_1688
Hypothetical protein.
  
     0.630
RN09_4609
Hypothetical protein.
       0.606
RN09_2193
Hypothetical protein.
  
     0.586
RN09_0360
Hypothetical protein.
 
     0.567
RN09_3527
D-amino acid aminohydrolase; Overlaps another CDS with the same product name.
 
     0.515
RN09_2802
Diacylglycerol acyltransferase; Belongs to the long-chain O-acyltransferase family.
 
     0.489
RN09_4253
Diacylglycerol O-acyltransferase; Belongs to the long-chain O-acyltransferase family.
 
     0.486
RN09_4613
Hypothetical protein.
  
    0.486
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.