Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4615Oxidoreductase; Overlaps another CDS with the same product name. (224 aa)    
Predicted Functional Partners:
RN09_4614
Oxidoreductase.
     0.850
RN09_4613
Hypothetical protein.
  
    0.601
RN09_2042
Polyketide synthase; Overlaps another CDS with the same product name.
 
 
0.567
RN09_1891
Polyketide synthase; Overlaps another CDS with the same product name.
 
 
0.550
PpsC
Phthiocerol synthesis polyketide synthase type I PpsC.
 
 
0.476
RN09_0165
3-hydroxyl-thioester dehydratase.
 
   0.473
EchA21
enoyl-CoA hydratase EchA21.
  
   0.445
RN09_0500
Membrane bound polyketide synthase.
  
 
 0.444
RN09_2045
Polyketide synthase; Overlaps another CDS with the same product name.
  
 
 0.444
RN09_0501
Membrane bound polyketide synthase; Overlaps another CDS with the same product name.
  
 
 0.432
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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