STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4617Aminotransferase. (398 aa)    
Predicted Functional Partners:
RN09_1806
Nitrogen fixation related protein.
 
 
 0.970
RN09_1804
ABC transporter ATP-binding protein.
 
  
 0.909
RN09_1803
Hypothetical protein.
 
 
 0.882
RN09_1802
Hypothetical protein.
 
 
 0.875
RN09_1088
Hypothetical protein.
   
   0.763
RN09_3988
Hypothetical protein.
  
 
 0.725
RN09_4618
Transmembrane protein.
       0.631
RN09_0470
Hypothetical protein.
  
   
 0.618
RfbD
O-antigen/lipopolysaccharide ABC transporter permease RfbD.
 
     0.597
RfbE
O-antigen/lipopolysaccharide ABC transporter ATP-binding protein RfbE.
 
     0.579
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.