Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PirGCell surface protein. (279 aa)    
Predicted Functional Partners:
RN09_1940
Hypothetical protein.
   
  
 0.771
Mtc28
Proline-rich protein.
   
    0.765
FbpC
Diacylglycerol acyltransferase/mycolyltransferase Ag85C.
   
  
 0.733
RN09_4659
Hypothetical protein.
  
  
 0.725
Cbs
Cystathionine beta-synthase.
     
 0.721
RN09_4654
Decaprenylphosphoryl-5-phosphoribose phosphatase.
       0.719
RN09_4652
Terminal beta-(1->2)-arabinofuranosyltransferase.
       0.679
RN09_4653
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
     
 0.675
RN09_1432
Conserved alanine and proline rich protein.
  
  
 0.641
RN09_0386
Hypothetical protein.
  
  
 0.574
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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