Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RN09_4665Acyltransferase; Overlaps another CDS with the same product name. (269 aa)    
Predicted Functional Partners:
RN09_4664
Acyltransferase; Overlaps another CDS with the same product name.
 
    
0.879
RN09_4662
Hypothetical protein.
  
    0.819
RN09_4663
Acyltransferase.
 
    
0.806
RN09_4666
Phosphotransferase.
       0.533
RN09_4545
Fatty acid synthase.
  
   
 0.505
RN09_4669
Hypothetical protein.
     
 0.483
Fas
Fatty acid synthase; Overlaps another CDS with the same product name.
 
  
 0.454
RN09_2630
Dihydroorotate dehydrogenase.
  
  
 0.434
PyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
  
 0.434
RN09_4654
Decaprenylphosphoryl-5-phosphoribose phosphatase.
 
 
 0.427
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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