Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
RN09_4690Phosphoglycerate mutase. (232 aa)    
Predicted Functional Partners:
pheA
Prephenate dehydratase.
       0.872
RN09_4692
Hypothetical protein.
       0.769
htpX
Protease HtpX; Belongs to the peptidase M48B family.
  
    0.767
Gap
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.742
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
 
 
 0.601
RN09_1204
Serine protease PepD.
 
    0.581
CobI
Bifunctional S-adenosyl-L-methionine-precorrin-2 methyl transferase/precorrin-3 methylase; Belongs to the precorrin methyltransferase family.
  
  
 0.561
EntC
Isochorismate synthase.
     
 0.524
RN09_4491
cAMP receptor protein.
   
 
 0.520
PepD
Serine protease PepD.
  
    0.513
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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