STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4695Transmembrane protein. (233 aa)    
Predicted Functional Partners:
GlpQ1
Glycerophosphoryl diester phosphodiesterase.
       0.880
RN09_0018
Membrane protein.
  
   
 0.830
RN09_1391
Hypothetical protein.
  
     0.773
RN09_1974
Membrane protein.
  
     0.771
RN09_2875
Hypothetical protein.
  
     0.766
LprB
Lipoprotein LprB.
  
     0.763
RN09_1485
Hypothetical protein.
  
     0.762
RN09_3483
Transmembrane protein.
  
     0.762
RN09_4763
ESX-2 secretion system protein EccB.
  
     0.762
RN09_1842
methylmalonyl-CoA mutase large subunit; Overlaps another CDS with the same product name.
  
     0.761
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.