Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4783Peptidoglycan biosynthesis protein. (605 aa)    
Predicted Functional Partners:
RN09_4785
Peptidoglycan biosynthesis protein; Overlaps another CDS with the same product name.
     0.978
RN09_4784
Peptidoglycan biosynthesis protein; Overlaps another CDS with the same product name.
      0.866
RN09_4782
Hypothetical protein.
 
     0.835
RN09_4781
Hypothetical protein.
 
     0.690
RodA
Cell division protein RodA; Belongs to the SEDS family.
 
   
 0.660
TB39.8
FHA domain-containing protein FhaA.
  
   
 0.642
RN09_4780
Mutator protein MutT; Belongs to the Nudix hydrolase family.
       0.628
RN09_4786
ECF RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
       0.621
PbpB
Penicillin-binding membrane protein PbpB.
 
   
 0.561
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.541
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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