STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN09_4792Hypothetical protein. (193 aa)    
Predicted Functional Partners:
RN09_3295
Hypothetical protein.
      
 0.672
RN09_4014
Hypothetical protein.
  
     0.622
RN09_0582
HTH-type transcriptional regulator.
  
     0.620
RN09_1647
Transcriptional regulator.
  
     0.606
RN09_1052
Hypothetical protein.
  
     0.535
RN09_1049
Hypothetical protein.
  
     0.523
RN09_3957
Hypothetical protein.
  
   
 0.523
RN09_3958
Hypothetical protein.
  
   
 0.502
RN09_3927
Hypothetical protein.
  
     0.501
RN09_1074
Transmembrane protein.
  
     0.500
Your Current Organism:
Mycobacterium tuberculosis variant africanum
NCBI taxonomy Id: 33894
Other names: ATCC 25420, CIP 105147, M. tuberculosis variant africanum, Mycobacterium africanum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.