ORV86804.1 protein (Mycobacterium interjectum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ORV86804.1

Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)

Predicted Functional Partners:

ORV85537.1

0.780

ORV86819.1

0.687

ORV86824.1

0.686

ORV86818.1

0.679

ORV91943.1

0.667

ORV90725.1

0.650

ORV89271.1

0.640

ORV85527.1

0.632

ORV93365.1

0.629

ORV82227.1

0.629

Your Current Organism:

Mycobacterium interjectum

NCBI taxonomy Id: 33895
Other names: ATCC 51457, CCUG 37514, DSM 44064, M. interjectum, strain 4185/92

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORV82227.1	ORV86804.1	AWC11_23880	AWC11_16705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
ORV85527.1	ORV86804.1	AWC11_01470	AWC11_16705	Pullulanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
ORV85537.1	ORV86804.1	AWC11_01525	AWC11_16705	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
ORV85537.1	ORV86818.1	AWC11_01525	AWC11_16800	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
ORV85537.1	ORV86819.1	AWC11_01525	AWC11_16805	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
ORV85537.1	ORV86824.1	AWC11_01525	AWC11_16835	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
ORV86804.1	ORV82227.1	AWC11_16705	AWC11_23880	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.629
ORV86804.1	ORV85527.1	AWC11_16705	AWC11_01470	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pullulanase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
ORV86804.1	ORV85537.1	AWC11_16705	AWC11_01525	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
ORV86804.1	ORV86818.1	AWC11_16705	AWC11_16800	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
ORV86804.1	ORV86819.1	AWC11_16705	AWC11_16805	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
ORV86804.1	ORV86824.1	AWC11_16705	AWC11_16835	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
ORV86804.1	ORV89271.1	AWC11_16705	AWC11_13755	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.640
ORV86804.1	ORV90725.1	AWC11_16705	AWC11_12375	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.650
ORV86804.1	ORV91943.1	AWC11_16705	AWC11_09660	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
ORV86804.1	ORV93365.1	AWC11_16705	AWC11_06315	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
ORV86818.1	ORV85537.1	AWC11_16800	AWC11_01525	Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
ORV86818.1	ORV86804.1	AWC11_16800	AWC11_16705	Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
ORV86818.1	ORV86819.1	AWC11_16800	AWC11_16805	Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ORV86819.1	ORV85537.1	AWC11_16805	AWC11_01525	Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About