STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilT-3Twitching motility pilus retraction ATPase. (347 aa)    
Predicted Functional Partners:
pilC
Type IV pilus inner membrane protein PilC.
 
  
 0.798
pihG
Type IV pilus inner membrane protein PihG.
 
  
 0.794
mshG
Type IV pilus inner membrane protein MshG.
 
  
 0.792
Pcar_0504
Hypothetical protein.
       0.784
pulF-2
Type II secretion system inner membrane protein PulF.
 
  
 0.782
pulF-1
Type II secretion system inner membrane protein PulF.
 
  
 0.781
pilD
Type IV prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.775
pilM
Type IV pilus biogenesis ATPase PilM.
 
   
 0.652
pilA-1
Geopilin.
 
   
 0.637
Pcar_1043
Competence protein, ComEC-related, putative.
     
 0.472
Your Current Organism:
Pelobacter carbinolicus
NCBI taxonomy Id: 338963
Other names: P. carbinolicus DSM 2380, Pelobacter carbinolicus DSM 2380, Pelobacter carbinolicus Gra Bd 1, Pelobacter carbinolicus str. DSM 2380, Pelobacter carbinolicus strain DSM 2380
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.