STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcar_0938Hypothetical protein. (463 aa)    
Predicted Functional Partners:
pgaA
Outer membrane TPR domain protein.
  
     0.709
pgaD
PgaD.
  
     0.691
Pcar_2512
Outer membrane channel, putative.
  
     0.660
Pcar_0070
Hypothetical protein.
  
     0.601
Pcar_2846
Hypothetical protein.
  
     0.598
Pcar_1990
Acetyltransferase, GNAT family, HATPase_c domain-containing.
  
   
 0.595
Pcar_3009
Outer membrane channel, putative.
  
     0.590
Pcar_2870
Hypothetical protein.
  
     0.573
Pcar_1774
Hypothetical protein.
  
 
 
 0.560
Pcar_2714
Hypothetical protein.
  
     0.547
Your Current Organism:
Pelobacter carbinolicus
NCBI taxonomy Id: 338963
Other names: P. carbinolicus DSM 2380, Pelobacter carbinolicus DSM 2380, Pelobacter carbinolicus Gra Bd 1, Pelobacter carbinolicus str. DSM 2380, Pelobacter carbinolicus strain DSM 2380
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.